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  • July 22, 2025
  • Engineering, Pharmaceuticals, San Francisco Bay Area, CA

4965 Machine Learning Engineer

Summary:
We are looking for talented Machine Learning Engineers to join Prescient Design, a division
devoted to developing structural and machine learning based methods for molecular design within the company’s Research and Early Development (gRED) organization.
The successful candidate will manage projects deploying new techniques for machine learning based molecular optimization for the analysis and design of small and large molecule drugs within target-driven design campaigns.
Special focus will be given to engineering pipelines for probabilistic molecular property prediction and Bayesian acquisition for active learning based drug discovery.
Additional activities may extend to include engineering pipelines for molecular generative
modeling.

The Role:
You will join Prescient Design within the Computational Sciences organization in
gRED. Your peers will be machine learning scientists, engineers, computational
chemists, and computational biologists.
You will closely collaborate with scientists within Prescient and across gRED.
You will develop machine learning and Bayesian optimization workflows to analyze
existing, and design new, small and large molecules.
You will be expected to form close working relationships with small molecule and
protein therapeutic development efforts across the gRED organization.
You will be expected to work on existing projects and generate new project ideas.

Qualifications:
PhD degree in a quantitative field (e.g., Computer Science, Chemistry, Chemical
Engineering, Computational Biology, Physics), or MS degree and 3+ years of industry
experience.
Demonstrated experience with machine learning libraries in production-ready
workflows (e.g., PyTorch + Lightning + Weights and Biases)
Record of achievement, including at least one high-impact first author publication or
equivalent.
Excellent written, visual, and oral communication and collaboration skills.

Additional Desired Qualifications:
Experience with physical modeling methods (e.g., molecular dynamics) and
cheminformatics toolkits (e.g., rdkit).
Previous focus on one or more of these areas: molecular property prediction,
computational chemistry, de novo drug design, medicinal chemistry, small molecule
design, self-supervised learning, geometric deep learning, Bayesian optimization,
probabilistic modeling, statistical methods.
Public portfolio of computational projects (available on e.g. GitHub).

The hiring range for this position is $60 -$70 per hour. The base pay actually offered will take into account internal equity, and may also vary depending on candidate’s geographic region, job-related knowledge, skills, and experience amongst other factors

Harvest Technical Services is an Equal Opportunity Employer. All qualified applicants will receive consideration for employment without regard to race, color, religion, gender, gender identity or expression, Sexual orientation, national origin, genetics, pregnancy, disability, age, veteran status, or any other federal, state, or local protected class.

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It is Harvest Technical Services, Inc. policy not to discriminate against any qualified employee or applicant for employment because of race, color, religion, sex, age, national origin, physical/mental handicap, or because the individual is a disabled, Vietnam Era or other eligible veteran.
Harvest Technical Services, Inc. is committed to fostering a diverse workforce, and maintaining a workplace that is equitable, inclusive and safe for all employees. From recruiting practices, to pay and benefits, promotions, and all other aspects of employment with us, an environment of equity is of the utmost importance. We not only recognize that you, and our employees, comprise a wide range of backgrounds and characteristics, but we believe those differences should be celebrated and valued.
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